[K8SPSMDB-854] Backup stucks after cluster was exposed. - Percona JIRA

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Type: Bug
Status: Open
Priority: High
Resolution: Fixed
Affects Version/s: 1.13.0
Fix Version/s: 1.15.0
Component/s: None
Labels:
None

Needs QA:
Yes
Needs Deploy:
Yes

Description

Backup stucks in requested state without any meaningful errors.
STR:
1. Run default cluster (with updateStrategy: Disabled)
2. Update expose oprions for rs and cfg:

enabled: false -> true

In operator logs we see the error (but it doesn't look as issue and was fixed before backup started.)

2023-02-02T13:02:01.599Z	ERROR	controller_psmdb	failed to reconcile cluster	{"Request.Namespace": "default", "Request.Name": "my-cluster-name", "replset": "cfg", "error": "fix hosts: write mongo config: replSetReconfig: connection(my-cluster-name-cfg-0.my-cluster-name-cfg.default.svc.cluster.local:27017[-109709]) incomplete read of message header: read tcp 10.4.1.9:54072->10.4.0.13:27017: use of closed network connection", "errorVerbose": "connection(my-cluster-name-cfg-0.my-cluster-name-cfg.default.svc.cluster.local:27017[-109709]) incomplete read of message header: read tcp 10.4.1.9:54072->10.4.0.13:27017: use of closed network connection\nreplSetReconfig\ngithub.com/percona/percona-server-mongodb-operator/pkg/psmdb/mongo.WriteConfig\n\t/go/src/github.com/percona/percona-server-mongodb-operator/pkg/psmdb/mongo/mongo.go:248\ngithub.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb.(*ReconcilePerconaServerMongoDB).reconcileCluster\n\t/go/src/github.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb/mgo.go:308\ngithub.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb.(*ReconcilePerconaServerMongoDB).Reconcile\n\t/go/src/github.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb/psmdb_controller.go:491\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).Reconcile\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:114\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:311\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:266\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).Start.func2.2\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:227\nruntime.goexit\n\t/usr/local/go/src/runtime/asm_amd64.s:1594\nfix hosts: write mongo config\ngithub.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb.(*ReconcilePerconaServerMongoDB).reconcileCluster\n\t/go/src/github.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb/mgo.go:310\ngithub.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb.(*ReconcilePerconaServerMongoDB).Reconcile\n\t/go/src/github.com/percona/percona-server-mongodb-operator/pkg/controller/perconaservermongodb/psmdb_controller.go:491\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).Reconcile\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:114\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:311\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:266\nsigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).Start.func2.2\n\t/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:227\nruntime.goexit\n\t/usr/local/go/src/runtime/asm_amd64.s:1594"}
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).Reconcile
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:114
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:311
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:266
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).Start.func2.2
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:227
2023-02-02T13:02:03.712Z	INFO	controller_psmdb	Cluster state changed	{"previous": "initializing", "current": "ready"}
2023-02-02T13:05:26.593Z	INFO	controller_perconaservermongodbbackup	Waiting for backup metadata	{"PBM name": "2023-02-02T13:05:21Z", "backup": "cron-my-cluster-name-20230202130500-862p2"}

If schedule backups are enabled, we see the error in backup-agent:

k logs my-cluster-name-rs0-2 -c backup-agent
2023-02-02T13:13:52.000+0000 E [agentCheckup] get replSetGetStatus: not found

But at the same time we can easily get settings from mongo:

s0:SECONDARY> db.adminCommand( { replSetGetStatus: 1 } )
{
	"set" : "rs0",
	"date" : ISODate("2023-02-02T13:16:30.560Z"),
	"myState" : 2,
	"term" : NumberLong(1),
	"syncSourceHost" : "10.8.14.28:27017",
	"syncSourceId" : 0,
	"heartbeatIntervalMillis" : NumberLong(2000),
	"majorityVoteCount" : 2,
	"writeMajorityCount" : 2,
	"votingMembersCount" : 3,
	"writableVotingMembersCount" : 3,
	"optimes" : {
		"lastCommittedOpTime" : {
			"ts" : Timestamp(1675343789, 2),
			"t" : NumberLong(1)
		},
		"lastCommittedWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
		"readConcernMajorityOpTime" : {
			"ts" : Timestamp(1675343789, 2),
			"t" : NumberLong(1)
		},
		"appliedOpTime" : {
			"ts" : Timestamp(1675343789, 2),
			"t" : NumberLong(1)
		},
		"durableOpTime" : {
			"ts" : Timestamp(1675343789, 2),
			"t" : NumberLong(1)
		},
		"lastAppliedWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
		"lastDurableWallTime" : ISODate("2023-02-02T13:16:29.850Z")
	},
	"lastStableRecoveryTimestamp" : Timestamp(1675343737, 1),
	"members" : [
		{
			"_id" : 0,
			"name" : "10.8.14.28:27017",
			"health" : 1,
			"state" : 1,
			"stateStr" : "PRIMARY",
			"uptime" : 871,
			"optime" : {
				"ts" : Timestamp(1675343789, 2),
				"t" : NumberLong(1)
			},
			"optimeDurable" : {
				"ts" : Timestamp(1675343789, 2),
				"t" : NumberLong(1)
			},
			"optimeDate" : ISODate("2023-02-02T13:16:29Z"),
			"optimeDurableDate" : ISODate("2023-02-02T13:16:29Z"),
			"lastAppliedWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
			"lastDurableWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
			"lastHeartbeat" : ISODate("2023-02-02T13:16:30.114Z"),
			"lastHeartbeatRecv" : ISODate("2023-02-02T13:16:29.383Z"),
			"pingMs" : NumberLong(0),
			"lastHeartbeatMessage" : "",
			"syncSourceHost" : "",
			"syncSourceId" : -1,
			"infoMessage" : "",
			"electionTime" : Timestamp(1675333495, 2),
			"electionDate" : ISODate("2023-02-02T10:24:55Z"),
			"configVersion" : 8,
			"configTerm" : 1
		},
		{
			"_id" : 1,
			"name" : "10.8.8.136:27017",
			"health" : 1,
			"state" : 2,
			"stateStr" : "SECONDARY",
			"uptime" : 871,
			"optime" : {
				"ts" : Timestamp(1675343789, 2),
				"t" : NumberLong(1)
			},
			"optimeDurable" : {
				"ts" : Timestamp(1675343789, 2),
				"t" : NumberLong(1)
			},
			"optimeDate" : ISODate("2023-02-02T13:16:29Z"),
			"optimeDurableDate" : ISODate("2023-02-02T13:16:29Z"),
			"lastAppliedWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
			"lastDurableWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
			"lastHeartbeat" : ISODate("2023-02-02T13:16:29.888Z"),
			"lastHeartbeatRecv" : ISODate("2023-02-02T13:16:29.558Z"),
			"pingMs" : NumberLong(8),
			"lastHeartbeatMessage" : "",
			"syncSourceHost" : "10.8.11.221:27017",
			"syncSourceId" : 2,
			"infoMessage" : "",
			"configVersion" : 8,
			"configTerm" : 1
		},
		{
			"_id" : 2,
			"name" : "10.8.11.221:27017",
			"health" : 1,
			"state" : 2,
			"stateStr" : "SECONDARY",
			"uptime" : 10339,
			"optime" : {
				"ts" : Timestamp(1675343789, 2),
				"t" : NumberLong(1)
			},
			"optimeDate" : ISODate("2023-02-02T13:16:29Z"),
			"lastAppliedWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
			"lastDurableWallTime" : ISODate("2023-02-02T13:16:29.850Z"),
			"syncSourceHost" : "10.8.14.28:27017",
			"syncSourceId" : 0,
			"infoMessage" : "",
			"configVersion" : 8,
			"configTerm" : 1,
			"self" : true,
			"lastHeartbeatMessage" : ""
		}
	],
	"ok" : 1,
	"$gleStats" : {
		"lastOpTime" : Timestamp(0, 0),
		"electionId" : ObjectId("000000000000000000000000")
	},
	"lastCommittedOpTime" : Timestamp(1675343789, 2),
	"$configServerState" : {
		"opTime" : {
			"ts" : Timestamp(1675343788, 4),
			"t" : NumberLong(-1)
		}
	},
	"$clusterTime" : {
		"clusterTime" : Timestamp(1675343789, 7),
		"signature" : {
			"hash" : BinData(0,"gA3VMnxb8CI6tr2U67Sr9QVBqIQ="),
			"keyId" : NumberLong("7195502652522758164")
		}
	},
	"operationTime" : Timestamp(1675343789, 2)
}

If schedule backups are disabled the error about

 get replSetGetStatus: not found

disappeared.

k logs my-cluster-name-rs0-2 -c backup-agent
**********************************************

2023-02-02T13:47:00.000+0000 I starting PITR routine
2023-02-02T13:47:00.000+0000 I node: rs0/10.8.8.136:27017
2023-02-02T13:47:00.000+0000 I listening for the commands
2023-02-02T13:47:05.000+0000 W [agentCheckup] get current storage status: query mongo: mongo: no documents in result

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Assignee:: Unassigned

Reporter:: Natalia Marukovich

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 03/Feb/23 7:19 AM

Updated:: 13/Apr/23 2:59 PM

Resolved:: 23/Feb/23 9:18 AM