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  1. Percona XtraDB Cluster
  2. PXC-1095

LP #1269842: Reproducable crash of Percona XtraDB cluster using large updates

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    Details

    • Type: Bug
    • Status: Done
    • Priority: High
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:

      Description

      **Reported in Launchpad by Ales Perme last update 17-11-2015 10:32:32

      We operate Percona XtraDB cluster of three servers version: 5.5.34-31.1, Percona XtraDB Cluster (GPL), Release 31.1, wsrep_25.9.r3928

      On a database having table with following structure:
      CREATE TABLE `docStatsDetail` (
      `date` date NOT NULL,
      `adId` varchar(36) COLLATE utf8_slovenian_ci NOT NULL,
      `userId` varchar(100) COLLATE utf8_slovenian_ci DEFAULT NULL,
      `adImpressions` int(11) DEFAULT '0',
      `adClicks` int(11) DEFAULT '0',
      `ts` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
      PRIMARY KEY (`date`,`adId`),
      KEY `TS` (`ts`),
      KEY `_adId` (`adId`),
      KEY `_userId` (`userId`)
      ) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_slovenian_ci;

      The table has 120 mio records and if we try to delete from this table more than 20 mio records using: DELETE FROM docStatsDetail LIMIT 20000000; the server crashes with a crash report:

      10:57:55 UTC - mysqld got signal 7 ;
      This could be because you hit a bug. It is also possible that this binary
      or one of the libraries it was linked against is corrupt, improperly built,
      or misconfigured. This error can also be caused by malfunctioning hardware.
      We will try our best to scrape up some info that will hopefully help
      diagnose the problem, but since we have already crashed,
      something is definitely wrong and this may fail.
      Please help us make Percona XtraDB Cluster better by reporting any
      bugs at https://bugs.launchpad.net/percona-xtradb-cluster

      key_buffer_size=134217728
      read_buffer_size=2097152
      max_used_connections=14
      max_threads=102
      thread_count=10
      connection_count=10
      It is possible that mysqld could use up to
      key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 759054 K bytes of memory
      Hope that's ok; if not, decrease some variables in the equation.

      Thread pointer: 0x5b7cdb0
      Attempting backtrace. You can use the following information to find out
      where mysqld died. If you see no messages after this, something went
      terribly wrong...
      stack_bottom = 7f31a953ae70 thread_stack 0x40000
      /usr/sbin/mysqld(my_print_stacktrace+0x2e)[0x7e5c1e]
      /usr/sbin/mysqld(handle_fatal_signal+0x4a4)[0x6bb5a4]
      /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)[0x7f3266e54cb0]
      /lib/x86_64-linux-gnu/libc.so.6(+0x14fecd)[0x7f326659becd]
      /usr/lib/libgalera_smm.so(_ZN6galera12MappedBuffer7reserveEm+0x263)[0x7f3264b33fa3]
      /usr/lib/libgalera_smm.so(_ZN6galera12MappedBuffer6resizeEm+0x19)[0x7f3264b34369]
      /usr/lib/libgalera_smm.so(_ZN6galera9TrxHandle5flushEm+0xb5)[0x7f3264b5ce65]
      /usr/lib/libgalera_smm.so(_ZN6galera13ReplicatorSMM9replicateEPNS_9TrxHandleEP14wsrep_trx_meta+0xd7)[0x7f3264b72537]
      /usr/lib/libgalera_smm.so(galera_pre_commit+0xbb)[0x7f3264b88eeb]
      /usr/sbin/mysqld(_Z22wsrep_run_wsrep_commitP3THDP10handlertonb+0xadf)[0x66cf9f]
      /usr/sbin/mysqld[0x66db3b]
      /usr/sbin/mysqld(_Z15ha_commit_transP3THDb+0x2f5)[0x6be3d5]
      /usr/sbin/mysqld(_Z17trans_commit_stmtP3THD+0x29)[0x662489]
      /usr/sbin/mysqld(_Z21mysql_execute_commandP3THD+0x77c)[0x5ac7bc]
      /usr/sbin/mysqld(_Z11mysql_parseP3THDPcjP12Parser_state+0x314)[0x5b4534]
      /usr/sbin/mysqld[0x5b4e58]
      /usr/sbin/mysqld(_Z16dispatch_command19enum_server_commandP3THDPcj+0x2502)[0x5b7972]
      /usr/sbin/mysqld(_Z10do_commandP3THD+0x167)[0x5b80f7]
      /usr/sbin/mysqld(_Z24do_handle_one_connectionP3THD+0x14f)[0x65490f]
      /usr/sbin/mysqld(handle_one_connection+0x51)[0x654ae1]
      /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f3266e4ce9a]
      /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f32665403fd]

      Trying to get some variables.
      Some pointers may be invalid and cause the dump to abort.
      Query (7f317c004b90): is an invalid pointer
      Connection ID (thread ID): 48
      Status: NOT_KILLED
      You may download the Percona XtraDB Cluster operations manual by visiting
      http://www.percona.com/software/percona-xtradb-cluster/. You may find information
      in the manual which will help you identify the cause of the crash.
      140116 11:57:55 mysqld_safe Number of processes running now: 0
      140116 11:57:55 mysqld_safe WSREP: not restarting wsrep node automatically
      140116 11:57:55 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended

      The servers have following settings:

      1. ------------------------------------------------------------
      2. wsrep provider configuration: basic wsrep options
      3. ------------------------------------------------------------
        wsrep_on = 1
        wsrep_debug = 0
        wsrep_provider = /usr/lib/libgalera_smm.so
        wsrep_provider_options = "gcache.size=16G;gcache.page_size=512M;"
      1. Empty gcomm address is being used when cluster is getting bootstrapped. Dont use it later. It will form new cluster!!!
        #wsrep_cluster_address = gcomm://
        wsrep_cluster_address = gcomm://ae-01
        wsrep_cluster_name = bolha_cluster

      wsrep_node_name = as-02.bolha.com
      wsrep_node_address = ae-02

      wsrep_sst_method = xtrabackup-v2
      wsrep_sst_auth = "sstuser:mXXXXXX9"
      wsrep_slave_threads = 8

      wsrep_notify_cmd = /etc/mysql/wsrep_notify

      1. Dodal aAP
        wsrep_max_ws_rows = 128K
        wsrep_max_ws_size = 4096M
      1. ------------------------------------------------------------
      2. InnoDB
      3. ------------------------------------------------------------
        innodb_log_file_size = 4096M
        innodb_log_files_in_group = 4
        innodb_buffer_pool_size = 1024M

      innodb_flush_log_at_trx_commit = 0
      innodb_log_buffer_size = 256M
      innodb_file_per_table = 1
      innodb_open_files = 131072
      innodb_io_capacity = 1000
      innodb_flush_method = O_DIRECT

      1. dodal AP
        innodb_adaptive_flushing_method = keep_average
        innodb_flush_neighbor_pages = none
        innodb_max_dirty_pages_pct = 60
        innodb_read_io_threads = 8
        innodb_write_io_threads = 8

      Servers are running on SSD's and the erorr is reproducable in every node.

      Servers are Linux based
      Linux XXX 3.2.0-57-generic #87-Ubuntu SMP Tue Nov 12 21:35:10 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux

      lsb_release -a
      No LSB modules are available.
      Distributor ID: Ubuntu
      Description: Ubuntu 12.04.4 LTS
      Release: 12.04
      Codename: precise

      PLEASE HELP!

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            • Assignee:
              krunal.bauskar Krunal Bauskar
              Reporter:
              lpjirasync lpjirasync (Inactive)
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              • Created:
                Updated: